Publications

Each paper that have been published about SBOL have been tagged with the following labels:
About SBOL: Papers about SBOL.
BBFRC (BioBrick Foundation Request for Comments Documents): Specifications published for SBOL.
Featuring SBOL: Papers featuring SBOL.
SBOL Software Tools: Tools supporting the SBOL data model and/or SBOL visual glyphs.

2018

2017

SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design (Zhang et al.)
A Validator and Converter for the Synthetic Biology Open Language (Zundel et al.)

2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016 (Falk et al.)
The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs (Madsen et al.)
Sharing Structure and Function in Biological Design with SBOL 2.0 (Roehner et al.)
Data Integration and Mining for Synthetic Biology Design (Misirli et al.)
VisBOL: Web-Based Tools for Synthetic Biology Design Visualization (McLaughlin et al.)

2015

Generating Systems Biology Markup Language Models from the Synthetic Biology Open Language (Roehner et al.)

2014

Synthetic Biology Open Language (SBOL) Version 2.0.0 (Bartley et al.)
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology (Galdzicki et al.)
Proposed Data Model for the Next Version of the Synthetic Biology Open Language (Roehner et al.)
Next steps for European synthetic biology: a strategic vision from ERASynBio
Featuring SBOL

www.erasynbio.eu

Directed Acyclic Graph-Based Technology Mapping of Genetic Circuit Models (Roehner et al.)

2013

A Methodology to Annotate Systems Biology Markup Language Models with the Synthetic Biology Open Language (Roehner et al.)
Pigeon: A Design Visualizer for Synthetic Biology (Bhatia et al.)
Synthetic Biology Open Language Visual (SBOL Visual), version 1.0.0 (Quinn et al.)

2012

Dynamic Modeling of Cellular Populations within iBioSim (Stevens et al.)
Synthetic Biology Open Language (SBOL) Version 1.1.0 (Galdzicki et al.)
An End-to-End Workflow for Engineering of Biological Networks from High-Level Specifications (Beal et al.)
Automated Selection of Synthetic Biology Parts for Genetic Regulatory Networks (Yaman et al.)

2011

2010

2009

Provisional BioBrick Language (PoBoL) (Galdzicki et al.)
BBF RFC 30: Draft of an RDF-based framework for the exchange and integration of Synthetic Biology data (Grunberg et al.)