Software for Synthetic Biology Workflows

Date: Thursday, June 27, 2019, 1:45pm-3:45pm EDT
Venue: New York Hilton – Midtown, New York, NY
Location Map: <https://www.google.com/maps/place/1335+6th+Ave,+New+York,+NY+10019/@40.7625654,-73.9819122,17z/data=!3m1!4b1!4m5!3m4!1s0x89c258f9ad303595:0x3270a54be206ffce!8m2!3d40.7625654!4d-73.9797235>;

This workshop is conducted as a part of SEED 2019. It is a tutorial session intended to introduce participants to recent software tools and how they can be used to address common challenges in synthetic biology.

  • The first half of the workshop will introduce a number of recent software tools and key underlying technologies, then show how these can be combined and incorporated into effective organism engineering workflows.
  • In the second half, participants will work hands-on with the tools in groups, with the instructors assisting them in applying tools hands-on to address prototypical example problems and/or challenges from their own work.
  • For the second half, participants are strongly encouraged to bring a laptop with network access.

Schedule:

1:45 PM    Introduction [10 min]   Nicholas Roehner, Raytheon BBN Technologies
1:55 PM    JBEI ICE/DIVA, EDD, and ART [15 min]  Hector Plahar, Mark Forrer, and Nathan Hillson, Joint BioEnergy Institute
2:10 PM    BOOST, BLiSS, and SynTrack [15 min]  Lisa Simirenko, Joint Genome Institute
2:25 PM    SynBioHub, iBioSim, and SBOL Designer [15 min]  Nicholas Roehner, Raytheon BBN Technologies
2:40 PM    Hands On Session [65 min]

About Vishwesh Kulkarni

I am an Assistant Professor at the School of Engineering of the University of Warwick and a core member of the Warwick Integrative Synthetic Biology Centre.