Applications

If you are a synthetic biologist, you may not be aware that there are already many software tools available that support different aspects of the synthetic biology workflow, such as optimizing DNA assembly or simulating gene networks.  Each of the software tools listed here supports exchange of genetic designs in the SBOL file format (SBOL core) or supports display of genetic designs using standard SBOL Visual glyphs.

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NameRepositoryDNADesignVisualImportExportLosslessWindowsLinuxMacWebAvailability
Benchling1.1Academic
Cello2.0Free
DeviceEditor1.11.1Free
DNAPlotLib1.11.1Free
Eugene1.11.1Free
GeneGenie2.0Free
GenoCAD1.1Free
GraphVizFree
Thumper2.02.0Commercial
iBioSim2.0/1.12.0Free
ICE2.02.0Free
j51.11.1Free
KeraFree
MoSeC1.1Free
PigeonFree
Proto BioCompiler1.1Free
RavenFree
SBOL Stack2.02.0Free
SBROME1.11.1Free
TeselaGen1.11.1Commercial
TinkerCell1.11.1Free
Vector Editor1.11.1Free
VirtualParts2.02.0Free
VisBOL2.0/1.1Free
SBOL Designer2.0/1.12.0/1.1Free