GeneGenie

GeneGenie supports the design and self-assembly of synthetic genes and constructs. GeneGenie allows for the design of oligonucleotide cohorts encoding the gene sequence optimized for expression in any suitable host through an intuitive, easy-to-use web interface. The tool ensures consistent oligomer overlapping melting temperatures, minimizes the likelihood of misannealing, optimizes codon usage for expression in a selected host, allows for specification of forward and reverse cloning sequences and also provides support for mutagenesis or directed evolution studies. Directed evolution studies are enabled through the construction of variant libraries via the optional specification of ‘variant codons’, containing mixtures of bases, at any position. For example, specifying the variant codon TNT (where N is any nucleotide) will encode a mixture of the amino acids Tyr, Ser, Cys and Phe.

Contact Person Neil Swainston
Organization(s) Manchester Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM)
Programming Language Java
OS/Platform Web
Availability Open-Source