2015 ACS Synthetic Biology Issues
Summary
- Total Articles Analyzed: 145
- Total Figures in All Articles: 743
- Figures Compatible with SBOL Visual: 177 (23.82%)
- Figures Compatible with SBOL Visual & Fully Compliant: 107 (60.45%)
- Figures Compatible with SBOL Visual & Following Best Practices: 38 (21.47%)
Individual issues
January
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Model-Driven Engineering of Gene Expression from RNA Replicons | 1 | 0 | |
| Proposed Data Model for the Next Version of the Synthetic Biology Open Language | 4 | 4 | ⭐ |
| Distributed Classifier Based on Genetically Engineered Bacterial Cell Cultures | 2 | 0 |
February
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| A Synthetic Anhydrotetracycline-Controllable Gene Expression System in Ralstonia eutropha H16 | 4 | 4 | ⭐ |
| Noise Propagation in Synthetic Gene Circuits for Metabolic Control | 1 | 0 | |
| Negative Feedback Regulation of Fatty Acid Production Based on a Malonyl-CoA Sensor–Actuator | 3 | 0 | |
| Trade-offs in Engineering Sugar Utilization Pathways for Titratable Control | 1 | 1 | ⭐ |
March
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| RADOM, an Efficient In Vivo Method for Assembling Designed DNA Fragments up to 10 kb Long in Saccharomyces cerevisiae | 4 | 0 | |
| Avoidance of Truncated Proteins from Unintended Ribosome Binding Sites within Heterologous Protein Coding Sequences | 1 | 0 | |
| Using Dynamic Noise Propagation to Infer Causal Regulatory Relationships in Biochemical Networks | 1 | 0 | |
| Assembly of Highly Standardized Gene Fragments for High-Level Production of Porphyrins in E. coli | 2 | 0 | |
| RNAi-Assisted Genome Evolution in Saccharomyces cerevisiae for Complex Phenotype Engineering | 1 | 0 |
April
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Rapid Evaluation of Tyrosine Kinase Activity of Membrane-Integrated Human Epidermal Growth Factor Receptor Using the Yeast Gγ Recruitment System | 1 | 0 | |
| A Set of Versatile Brick Vectors and Promoters for the Assembly, Expression, and Integration of Synthetic Operons in Methylobacterium extorquens AM1 and Other Alphaproteobacteria | 1 | 0 | |
| Engineering Bacterial Microcompartment Shells: Chimeric Shell Proteins and Chimeric Carboxysome Shells | 1 | 0 | |
| Programming Controlled Adhesion of E. coli to Target Surfaces, Cells, and Tumors with Synthetic Adhesins | 1 | 1 | ⭐ |
May
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription–Translation (TX-TL) Systems | 6 | 6 | ⭐ |
| Synthetic Tunable Amplifying Buffer Circuit in E. coli | 2 | 0 | |
| Homology-Integrated CRISPR–Cas (HI-CRISPR) System for One-Step Multigene Disruption in Saccharomyces cerevisiae | 5 | 0 | |
| Synthetic Biology Toolbox for Controlling Gene Expression in the Cyanobacterium Synechococcus sp. strain PCC 7002 | 2 | 0 |
June
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Accurate Predictions of Genetic Circuit Behavior from Part Characterization and Modular Composition | 4 | 0 | |
| Expansion of Bisindole Biosynthetic Pathways by Combinatorial Construction | 1 | 0 | |
| Web-Based Software Tool for Constraint-Based Design Specification of Synthetic Biological Systems | 1 | 0 |
July
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| BASIC: A New Biopart Assembly Standard for Idempotent Cloning Provides Accurate, Single-Tier DNA Assembly for Synthetic Biology | 1 | 1 | ⭐ |
| Rationally Designed MicroRNA-Based Genetic Classifiers Target Specific Neurons in the Brain | 1 | 0 | |
| Enhancing Bidirectional Electron Transfer of Shewanella oneidensis by a Synthetic Flavin Pathway | 1 | 1 | ⭐ |
August
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Generating Systems Biology Markup Language Models from the Synthetic Biology Open Language | 3 | 3 | ⭐ |
| Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis | 1 | 0 |
September
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Enhanced Protein Production in Escherichia coli by Optimization of Cloning Scars at the Vector–Coding Sequence Junction | 1 | 0 | |
| Regulation of Bacterial Gene Expression by Protease-Alleviated Spatial Sequestration (PASS) | 4 | 0 |
October
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Enzymatic Menthol Production: One-Pot Approach Using Engineered Escherichia coli | 1 | 0 |
November
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Genome Engineering of the 2,3-Butanediol Biosynthetic Pathway for Tight Regulation in Cyanobacteria | 5 | 4 | |
| A Barcoding Strategy Enabling Higher-Throughput Library Screening by Microscopy | 1 | 0 | |
| CasEMBLR: Cas9-Facilitated Multiloci Genomic Integration of in Vivo Assembled DNA Parts in Saccharomyces cerevisiae | 2 | 0 |
December
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Synthetic Auxotrophs with Ligand-Dependent Essential Genes for a BL21(DE3) Biosafety Strain | 1 | 0 | |
| Development of a Synthetic Malonyl-CoA Sensor in Saccharomyces cerevisiae for Intracellular Metabolite Monitoring and Genetic Screening | 1 | 0 | |
| Engineering a Lysine-ON Riboswitch for Metabolic Control of Lysine Production in Corynebacterium glutamicum | 2 | 0 | |
| Evolutionary Design of Choline-Inducible and -Repressible T7-Based Induction Systems | 2 | 0 | |
| Memory and Combinatorial Logic Based on DNA Inversions: Dynamics and Evolutionary Stability | 3 | 3 | ⭐ |
