2019 ACS Synthetic Biology Issues
Summary
- Total Articles Analyzed: 287
- Total Figures in All Articles: 1512
- Figures Compatible with SBOL Visual: 432 (28.57%)
- Figures Compatible with SBOL Visual & Fully Compliant: 219 (50.69%)
- Figures Compatible with SBOL Visual & Following Best Practices: 126 (29.17%)
Individual issues
January
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Designing Spatially Distributed Gene Regulatory Networks To Elicit Contrasting Patterns | 1 | 0 | |
| Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli | 2 | 2 | ⭐ |
| Engineering the S-Layer of Caulobacter crescentus as a Foundation for Stable, High-Density, 2D Living Materials | 1 | 0 | |
| sboljs: Bringing the Synthetic Biology Open Language to the Web Browser | 2 | 2 | ⭐ |
February
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Riboswitch Signal Amplification by Controlling Plasmid Copy Number | 2 | 2 | ⭐ |
| Building Microbial Hosts for Heterologous Production of N-Methylpyrrolinium | 2 | 0 | |
| A Regulatory NADH/NAD+ Redox Biosensor for Bacteria | 1 | 1 | ⭐ |
| Chimeric LysR-Type Transcriptional Biosensors for Customizing Ligand Specificity Profiles toward Flavonoids | 7 | 0 | |
| CRISPR/Cas9-Based Genome Editing in the Filamentous Fungus Fusarium fujikuroi and Its Application in Strain Engineering for Gibberellic Acid Production | 2 | 2 | ⭐ |
March
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Characterizing Transcriptional Interference between Converging Genes in Bacteria | 4 | 4 | ⭐ |
| Construction of a Nonnatural C60 Carotenoid Biosynthetic Pathway | 5 | 5 | ⭐ |
| Synthetic Genome Defenses against Selfish DNA Elements Stabilize Engineered Bacteria against Evolutionary Failure | 7 | 7 | ⭐ |
| An Artificial Biosynthetic Pathway for 2-Amino-1,3-Propanediol Production Using Metabolically Engineered Escherichia coli | 2 | 0 | |
| Metabolic Engineering of a Homoserine-Derived Non-Natural Pathway for the De NovoProduction of 1,3-Propanediol from Glucose | 4 | 0 | |
| Modulating Responses of Toehold Switches by an Inhibitory Hairpin | 2 | 0 | |
| Construction of Incoherent Feedforward Loop Circuits in a Cell-Free System and in Cells | 2 | 2 | ⭐ |
April
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Developing Riboswitch-Mediated Gene Regulatory Controls in Thermophilic Bacteria | 2 | 1 | |
| Spatiotemporal Gene Repression System in the Heterocyst-Forming Multicellular Cyanobacterium Anabaena sp. PCC 7120 | 2 | 2 | ⭐ |
| Building an Inducible T7 RNA Polymerase/T7 Promoter Circuit in Synechocystis sp. PCC6803 | 4 | 1 | |
| Modeling Genetic Circuit Behavior in Transiently Transfected Mammalian Cells | 3 | 3 | ⭐ |
| An Expanded Synthetic Biology Toolkit for Gene Expression Control in Acetobacteraceae | 6 | 0 | |
| Direct Aromatic Nitration System for Synthesis of Nitrotryptophans in Escherichia coli | 1 | 1 | ⭐ |
| PLANT-Dx: A Molecular Diagnostic for Point-of-Use Detection of Plant Pathogens | 1 | 0 | |
| Rapid Assembly of gRNA Arrays via Modular Cloning in Yeast | 2 | 0 |
May
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Core Catalysis of the Reductive Glycine Pathway Demonstrated in Yeast | 1 | 0 | |
| Endocytosing Escherichia coli as a Whole-Cell Biocatalyst of Fatty Acids | 2 | 0 | |
| Genetic Incorporation of Noncanonical Amino Acids Using Two Mutually Orthogonal Quadruplet Codons | 1 | 0 | |
| Rapid, Heuristic Discovery and Design of Promoter Collections in Non-Model Microbes for Industrial Applications | 1 | 1 | ⭐ |
June
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Design and Evaluation of Synthetic Terminators for Regulating Mammalian Cell Transgene Expression | 1 | 0 | |
| Guiding Biomolecular Interactions in Cells Using de Novo Protein–Protein Interfaces | 5 | 0 | |
| Expanding the Isoprenoid Building Block Repertoire with an IPP Methyltransferase from Streptomyces monomycini | 1 | 0 | |
| Engineering Adenylate Cyclase Activated by Near-Infrared Window Light for Mammalian Optogenetic Applications | 2 | 1 | |
| Lessons from Two Design–Build–Test–Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning | 3 | 3 | ⭐ |
| Intracellular Noise Level Determines Ratio Control Strategy Confined by Speed–Accuracy Trade-off | 1 | 0 | |
| RiboCas: A Universal CRISPR-Based Editing Tool for Clostridium | 3 | 0 | |
| Development of a Genetically Encoded Biosensor for Detection of Polyketide Synthase Extender Units in Escherichia coli | 2 | 0 | |
| Engineered Reversal of Function in Glycolytic Yeast Promoters | 1 | 0 | |
| Characterization of a Panel of Strong Constitutive Promoters from Streptococcus thermophilus for Fine-Tuning Gene Expression | 1 | 0 |
July
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| An Automated Biomodel Selection System (BMSS) for Gene Circuit Designs | 3 | 3 | ⭐ |
| SBOL-OWL: An Ontological Approach for Formal and Semantic Representation of Synthetic Biology Information | 4 | 4 | ⭐ |
| pySBOL: A Python Package for Genetic Design Automation and Standardization | 1 | 1 | ⭐ |
| Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL) | 2 | 2 | ⭐ |
| A Computational Workflow for the Automated Generation of Models of Genetic Designs | 8 | 8 | ⭐ |
| Design Principles for Compartmentalization and Spatial Organization of Synthetic Genetic Circuits | 1 | 0 | |
| An Engineered B. subtilis Inducible Promoter System with over 10 000-Fold Dynamic Range | 1 | 1 | ⭐ |
August
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Synthetic, Context-Dependent Microbial Consortium of Predator and Prey | 2 | 2 | ⭐ |
| Inducible Gene Switches with Memory in Human T Cells for Cellular Immunotherapy | 4 | 4 | ⭐ |
| Decorating the Outer Surface of Microbially Produced Protein Nanowires with Peptides | 2 | 0 | |
| Communicating Structure and Function in Synthetic Biology Diagrams | 7 | 7 | ⭐ |
| Producing Gram-Scale Unnatural Rosavin Analogues from Glucose by Engineered Escherichia coli | 2 | 0 |
September
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Development of a Vanillate Biosensor for the Vanillin Biosynthesis Pathway in E. coli | 2 | 1 | |
| A Model for the Spatiotemporal Design of Gene Regulatory Circuits | 2 | 2 | ⭐ |
| Spatiotemporal Dynamics of Synthetic Microbial Consortia in Microfluidic Devices | 1 | 0 | |
| Genome Engineering of Eubacterium limosum Using Expanded Genetic Tools and the CRISPR-Cas9 System | 1 | 1 | ⭐ |
| Synthetic Biology Tools for the Fast-Growing Marine Bacterium Vibrio natriegens | 2 | 2 | ⭐ |
| Quantification of Interlaboratory Cell-Free Protein Synthesis Variability | 1 | 1 | ⭐ |
| ynthetic Gene Circuits Enable Escherichia coli To Use Endogenous H2S as a Signaling Molecule for Quorum Sensing | 5 | 5 | ⭐ |
October
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Low-Burden Biological Feedback Controllers for Near-Perfect Adaptation | 1 | 1 | ⭐ |
| Amelioration of Diabetes in a Murine Model upon Transplantation of Pancreatic β-Cells with Optogenetic Control of Cyclic Adenosine Monophosphate | 1 | 1 | ⭐ |
| Modular Thermal Control of Protein Dimerization | 3 | 3 | ⭐ |
| SBOLExplorer: Data Infrastructure and Data Mining for Genetic Design Repositories | 2 | 2 | ⭐ |
| Development of a Highly Sensitive Whole-Cell Biosensor for Arsenite Detection through Engineered Promoter Modifications | 1 | 1 | ⭐ |
| Characterization and Engineering of a Clostridium Glycine Riboswitch and Its Use To Control a Novel Metabolic Pathway for 5-Aminolevulinic Acid Production in Escherichia coli | 1 | 0 | |
| Industrializing a Bacterial Strain for l-Serine Production through Translation Initiation Optimization | 4 | 3 | |
| An AND-Gated Drug and Photoactivatable Cre-loxP System for Spatiotemporal Control in Cell-Based Therapeutics | 4 | 0 | |
| Semisynthesis of the Neuroprotective Metabolite, Serofendic Acid | 3 | 3 | ⭐ |
| Genetic Circuits To Detect Nanomaterial Triggered Toxicity through Engineered Heat Shock Response Mechanism | 2 | 1 | |
| Production of Phytochromes by High-Cell-Density E. coli Fermentation | 1 | 0 |
November
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Model-Driven Engineering of N-Linked Glycosylation in Chinese Hamster Ovary Cells | 2 | 2 | ⭐ |
| In Vitro Transcriptional Regulation via Nucleic-Acid-Based Transcription Factors | 4 | 2 |
December
| Article | No. of SBOL Visual compliant images | No. of SBOL Visual images following Best practices | |
|---|---|---|---|
| Advancing CRISPR-Based Programmable Platforms beyond Genome Editing in Mammalian Cells | 1 | 0 | |
| Detecting Changes in the Caenorhabditis elegans Intestinal Environment Using an Engineered Bacterial Biosensor | 1 | 1 | ⭐ |
| Seeded Chain-Growth Polymerization of Proteins in Living Bacterial Cells | 1 | 0 | |
| Pregnenolone Overproduction in Yarrowia lipolytica by Integrative Components Pairing of the Cytochrome P450scc System | 2 | 2 | ⭐ |
| Switching the Ligand Specificity of the Biosensor XylS from meta to para-Toluic Acid through Directed Evolution Exploiting a Dual Selection System | 1 | 1 | ⭐ |
| Engineering New Branches of the Kynurenine Pathway To Produce Oxo-(2-aminophenyl) and Quinoline Scaffolds in Yeast | 1 | 1 | ⭐ |
| Organism Engineering for the Bioproduction of the Triaminotrinitrobenzene (TATB) Precursor Phloroglucinol (PG) | 1 | 1 | ⭐ |
