/tag/converter/ConverterWowchemy (https://wowchemy.com)en-usTue, 30 Jun 2020 00:00:00 +0000/images/logo.svg/tag/converter//applications/boost/Tue, 30 Jun 2020 00:00:00 +0000/applications/boost/<p>Build-OptimizatiOn Software Tools (BOOST) is a platform of tools to design DNA sequences for manufacturing. Currently, BOOST consists of three tools: (i) The &ldquo;Juggler&rdquo; reverse translates protein sequences into DNA sequences and codon juggles DNA sequences, (ii) The &ldquo;Polisher&rdquo; verifies DNA sequences against DNA synthesis constraints. In addition, the &ldquo;Polisher&rdquo; can modify the protein coding regions of DNA sequences in order to resolve eventual violations of DNA synthesis constraints. (iii) The &ldquo;Partitioner&rdquo; decomposes large DNA sequences into synthesizable building blocks with assembly-specific overlap sequences.</p> <table> <thead> <tr> <th></th> <th></th> </tr> </thead> <tbody> <tr> <td>Contact Person</td> <td>Ernst Oberortner</td> </tr> <tr> <td>Organization(s)</td> <td>DOE Joint Genome Institute, Lawrence Berkeley National Labs</td> </tr> <tr> <td>Programming Language</td> <td>JAva</td> </tr> <tr> <td>OS/Platform</td> <td>Linux/Mac/Win/Web</td> </tr> <tr> <td>Availability</td> <td>Free for academic users</td> </tr> </tbody> </table>/applications/sbolgenbank/Tue, 30 Jun 2020 00:00:00 +0000/applications/sbolgenbank/<table> <thead> <tr> <th></th> <th></th> </tr> </thead> <tbody> <tr> <td>Contact Person</td> <td>Nathan Hillson</td> </tr> <tr> <td>Organization(s)</td> <td>Berkeley Lab</td> </tr> <tr> <td>Programming Language</td> <td>Perl</td> </tr> <tr> <td>OS/Platform</td> <td>Web</td> </tr> <tr> <td>Availability</td> <td>Free for all users</td> </tr> </tbody> </table>/applications/sbolvalidator/Tue, 30 Jun 2020 00:00:00 +0000/applications/sbolvalidator/<p>SBOL Validator/Converter is a simple, easy-to-use software tool that allows for conversion between SBOL/GenBank/FASTA files using the Synthetic Biology Open Language (SBOL) 2.0 data model. The motivation behind the SBOL Validator/Converter is to provide a universally-accepted tool with the capability to check the validity of files. This tool serves as a platform for developers to verify correct implementation of the SBOL data standard, authors to ensure that data is represented properly, and editors to verify SBOL compliance of all software tools and libraries. Some key features of the Validator/Converter include its ability to convert between SBOL, FASTA, and GenBank files and that the tool is web-based which promotes ease of access and allows for central maintenance of validation methods. SBOL Validator/Converter is made freely available under the Apache 2.0 license.</p> <div style="position: relative; padding-bottom: 56.25%; height: 0; overflow: hidden;"> <iframe src="https://www.youtube.com/embed/tQ28wj4fmW8" style="position: absolute; top: 0; left: 0; width: 100%; height: 100%; border:0;" allowfullscreen title="YouTube Video"></iframe> </div> <table> <thead> <tr> <th></th> <th></th> </tr> </thead> <tbody> <tr> <td>Contact Person</td> <td>Zach Zundel</td> </tr> <tr> <td>Organization(s)</td> <td>University of Utah</td> </tr> <tr> <td>Programming Language</td> <td>Python/Java</td> </tr> <tr> <td>OS/Platform</td> <td>Web</td> </tr> <tr> <td>Availability</td> <td>Open-Source</td> </tr> <tr> <td>License</td> <td>Apache 2.0</td> </tr> </tbody> </table>