Design

j5

DNA assembly design automation

MoSeC

Automated derivation of genetic circuit designs from computational models.

Parts & Pools

A graphical, drag and drop design of synthetic gene circuit with Standard Biological Parts.

Pinecone

Serotiny’s web-based protein design software aimed at researchers doing R&D for therapeutics, materials, as well as those in basic research.

Pool Designer

Designing Multiplexed Pools for Assembling Library Constructs

Proto BioCompiler

Proto BioCompiler generates optimized genetic regulatory network designs from specifications written in a high-level programming language, producing both SBOL specifications, visualization, and ODE models.

SBOLDesigner

A simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using SBOL

ShortBOL

A shorthand language for SBOL

Tellurium

A Python environment based on spyder2 IDE, designed for systems and synthetic biology simulations.

TinkerCell

A widely used open source network design and simulation application tool for synthetic biology