SBOL Visual

Synthetic Biology Open Language Visual (SBOL Visual) Version 3.0

People who engineer biological organisms often find it useful to draw diagrams in order to communicate both the structure of the nucleic acid sequences that they are engineering and the functional relationships between sequence features and other …

paraSBOLv: A Foundation for Standard-Compliant Genetic Design Visualization Tools

Diagrams constructed from standardized glyphs are central to communicating complex design information in many engineering fields. For example, circuit diagrams are commonplace in electronics and allow for a suitable abstraction of the physical system …

Cello

A tool for Genetic circuit design automation

Device Editor

Visual biocad canvas for specifying combinatorial DNA constructs for fabrication

DNAplotlib

DNAplotlib enables highly customizable visualization of individual genetic constructs and libraries of design variants. It can be thought of in many ways as matplotlib for genetic diagrams.

Eugene

A textual specification language for the rule-based design of synthetic biological systems, devices, parts, and DNA sequences.

Finch

Rule-based generation of constructs

GenoCAD

A rule-based DNA design tool.

Graphviz

a package of open-source tools initiated by AT&T Labs Research for drawing graphs specified in DOT language scripts.

iBioSim

iBioSim has been developed for the modeling, analysis, and design of genetic circuits.