iBioSim has been developed for the modeling, analysis, and design of genetic circuits.
Physical and Informatic repository and associated tools for plant seeds, microbial strains, DNA and protein sequences.
DNA assembly design automation
A tool for creating SBOL Visual diagrams from a concise textual representation.
Serotiny’s web-based protein design software aimed at researchers doing R&D for therapeutics, materials, as well as those in basic research.
Designing Multiplexed Pools for Assembling Library Constructs
Proto BioCompiler generates optimized genetic regulatory network designs from specifications written in a high-level programming language, producing both SBOL specifications, visualization, and ODE models.
A simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using SBOL
A registry for storing and sharing genetic circuit designs using the SBOL2 standard
A Python environment based on spyder2 IDE, designed for systems and synthetic biology simulations.