Visualization

Device Editor

Visual biocad canvas for specifying combinatorial DNA constructs for fabrication

DNAplotlib

DNAplotlib enables highly customizable visualization of individual genetic constructs and libraries of design variants. It can be thought of in many ways as matplotlib for genetic diagrams.

Eugene

A textual specification language for the rule-based design of synthetic biological systems, devices, parts, and DNA sequences.

Finch

Rule-based generation of constructs

Flapjack

Flapjack is a data management and analysis app for genetic circuit characterization to store, share, mix, analyze and plot your SynBio data

Graphviz

a package of open-source tools initiated by AT&T Labs Research for drawing graphs specified in DOT language scripts.

iBioSim

iBioSim has been developed for the modeling, analysis, and design of genetic circuits.

ICE

Physical and Informatic repository and associated tools for plant seeds, microbial strains, DNA and protein sequences.

MoSeC

Automated derivation of genetic circuit designs from computational models.

Pigeon Visualizer

A simple chart, cheat sheet, and short accessible document describing the latest SBOL data model. A faster adoption process for SBOL Visual glyphs